Publications

[1]

Mats Perk, Sami Pietilä, Tommi Välikangas, Balazs Balint, Tomi Suomi, and Laura L. Elo. Complete Data Analysis Workflow for Quantitative DIA Mass Spectrometry Using Nextflow. Journal of Proteome Research, 25(3):1265–1273, 2026. PMID: 41650299. URL: https://doi.org/10.1021/acs.jproteome.5c00266, arXiv:https://doi.org/10.1021/acs.jproteome.5c00266, doi:10.1021/acs.jproteome.5c00266.

[2]

Sami Pietilä, Tomi Suomi, and Laura L. Elo. Introducing untargeted data-independent acquisition for metaproteomics of complex microbial samples. ISME Communications, 2(1):51, Jun 2022. URL: https://doi.org/10.1038/s43705-022-00137-0, doi:10.1038/s43705-022-00137-0.

[3]

Juhani Aakko, Sami Pietilä, Tomi Suomi, Mehrad Mahmoudian, Raine Toivonen, Petri Kouvonen, Anne Rokka, Arno Hänninen, and Laura L. Elo. Data-Independent Acquisition Mass Spectrometry in Metaproteomics of Gut Microbiota–Implementation and Computational Analysis. Journal of Proteome Research, 19(1):432–436, 2020. PMID: 31755272. URL: https://doi.org/10.1021/acs.jproteome.9b00606, arXiv:https://doi.org/10.1021/acs.jproteome.9b00606, doi:10.1021/acs.jproteome.9b00606.